Question

Open Source Tool That Could Propose Pcr Primers

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11.2 years ago

audrius.meskauskas ▴ 100

Could anyone recomment an existing open source tool or library to recommend PCR primers for the given sequence? We found some like of these here but it seems having no source code readily available. This is required as most likely we may need to tweak that code, our project is quite specific.

GUI is not important and may not be any (just a library is ok).

pcr java • 3.0k views

ADD COMMENT • link updated 11.2 years ago by always_learning ★ 1.1k • written 11.2 years ago by audrius.meskauskas ▴ 100

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What organisms you are working with?

ADD REPLY • link 11.2 years ago by PoGibas 5.1k

score 5 · Answer 1 · 2013-09-30

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11.2 years ago

Ido Tamir 5.2k

http://primer3.sourceforge.net/ is one of the oldest and most popular

ADD COMMENT • link 11.2 years ago by Ido Tamir 5.2k

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Looks like a very impressive project and I really thank for this answer. We would prefer something in Java anyway this one seems good for us.

ADD REPLY • link 11.1 years ago by audrius.meskauskas ▴ 100

score 0 · Answer 2 · 2013-09-30

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11.2 years ago

vaskin90 ▴ 290

Try UGENE (http://ugene.unipro.ru/) that integrates Primer3(http://primer3.sourceforge.net/)

ADD COMMENT • link 11.2 years ago by vaskin90 ▴ 290

score 0 · Answer 3 · 2013-09-30

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11.2 years ago

always_learning ★ 1.1k

Use Primer 3!! Its most widely used and accepted one !! Try to get the latest version.

ADD COMMENT • link 11.2 years ago by always_learning ★ 1.1k