Tool To Convert Affy Oncoscan Data Into Affy Snp6.0 Format

Question

[Jason]

Hi everyone,

I am looking for a tool to convert Affy OncoScan format files into Affy SNP6.0 files. Affy 6.0 SNP array file is a cumulative file of LogR for all samples whereas Affy OncoScan provide individual file for LogR for each sample. I believe it can be done with a code in any suitable programming language but the problem I'm facing is that each OncoScan sample has different probes and making a cumulative file for all probes would introduce a myriad of missing values across all samples..Any ideas would be much appreciated!

Cheers