Batch Clustering Of Genes According To Their Function Or Biological Process

Question

[ThePresident]

Hello,

Quick question: I have a bunch of differentially regulated genes from bacterial RNA-seq experiment (test vs control). I would like to know if those DE genes present any kind of «enrichment» or clustering of particular processes (virulence, metabolic genes, transport and so on). Is there an automated way of doing it, i.e. supplying a list of genes to a database?

Thanks,

TP

Answer 1

[Sean Davis]

You might take a look at DAVID.

http://david.abcc.ncifcrf.gov/

[ThePresident]

Sounds promising. I'll give it a try. Thank you.