Question

Blast2Go Command Line Usage

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11.1 years ago

polangxin ▴ 80

I hava installed blast2go on my local server, but this server do not hava X-window. so i use: java -cp .:mysql-connector-java-5.0.8-bin.jar: ImportIdMapping /your/path/to/idmapping.tb localhost b2gdb blast2go blast4it to run b2g, and it comes a html file as result.

but i've read the manual of b2g, in the GUI mode, it can do a lot more, like Statistical Analysis: Enrichment analysis, Fisher exact test result table, 'enriched' graph, Sequence Distribution/Go as multlevel-Pie.

are there any other command line usage of blast2go can do this jobs?

Thanks!

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ADD COMMENT • link updated 11.1 years ago by Hamish ★ 3.3k • written 11.1 years ago by polangxin ▴ 80

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What operating system are you using? Windows, Mac, Linux? The simplest thing might be to just get X11 working.

ADD REPLY • link 11.1 years ago by Torst ▴ 980

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I'm using Linux server, and do not have X11. i know GUI mode could do all of that, but i want to know there's command line usage of B2G? Thanks for helping!

ADD REPLY • link 11.1 years ago by polangxin ▴ 80

score 0 · Answer 1 · 2013-11-01

Given that this is now a couple of weeks old, and does not have an answer here, you might be better off trying the Blast2GO Google Group, where you will find folks that can provide more assistance with the use of the Blast2GO command-line and the various Blast2GO tools.

If that does not help I suggest you contact Blast2GO Support and let them know, that there are features you would like to see in the Blast2GO software that you are unable to find in the current version.