Salmonella Annotation For Rna-Seq Analysis

Question

[robjohn7000]

Hi,

Does anyone know where I can find annotation for Salmonella enterica SL13144 (required for mapping RNA-Seq reads)? I have looked for a GFF (ensembl) and also checked UCSC without any success.

Thanks.

Answer 1

[Konrad]

I assume you mean the strain SL1344 (not SL13144). If so have a look at this:

ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Salmonella_enterica_serovar_Typhimurium_SL1344_uid86645/

[Neilfws]

Yes, the only source for "SL13144" found via Google search is this question :)

[robjohn7000]

Apologies for spelling mistake. Yes, exactly what I wanted. Thanks a lot Konrad!