Can Homozygous Snps Be Used To Construct A Phylogeny?

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11.1 years ago

Adrian Pelin ★ 2.6k

If I have illumina sequencing for 6 isolates and I map them to a reference, I can obtain a VCF file with homozygous SNPs.

How can I use these to reconstruct a phylogeny? Is there any tool that can read VCF and feed it into a phylogenetic model?

Adrian

vcf phylogeny bowtie2 • 2.7k views

ADD COMMENT • link updated 11.1 years ago by Istvan Albert 101k • written 11.1 years ago by Adrian Pelin ★ 2.6k

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ADD REPLY • link updated 4.9 years ago by Ram 44k • written 11.1 years ago by always_learning ★ 1.1k

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