Entering edit mode
11.1 years ago
zhangpeng1334880
•
0
Hi, All..
I have a question related to "ERANGE" for RNA-seq analysis. I got an empty file after running the "getsplicefa.py" script..
the result is as following:
psyco not running
getsplicefa: version 1.1
72408
659533
10002 genes
20003 genes
30004 genes
40005 genes
50006 genes
60007 genes
70008 genes
6487 splices too short to be seen
15287 splices will be under-reported
And my command is :
$python erange-4522d28/getsplicefa.py hsapiens knownGene.txt hg19splice76.fa 72
Any reply will be thankful.
