Is there any web based service for global alignment whose output is simple i.e only the amino acids and the gaps without anything on margins before and after the 2 sequences for example:
MYIS
-NIS
I tried emboss and blast and couldn't figure out how to have such output.
Thanks in advance
There are many multiple alignment programs and most of them use global alignment. Almost all of them output results (alignment) in more than one type (see types here). Just select the format you want and use the program of your choice to get your job done!
BLAST (Basic Local Alignment Search Tool) does not perform a global alignment.