Programs For Estimating Admixture Dates Using Genome-Wide Snp Data?
1
1
Entering edit mode
11.1 years ago
Javier2013 ▴ 90

Hi:

This is a general question.

I wanted to what software programs are currently available for estimating admixture dates using genome-wide SNP data?

I was using ALDER and ROLLOFF, but since I want to date an admixture event from a close related population to my test population I do not get any significant result.

Thanks in advance.

snp • 2.7k views
ADD COMMENT
1
Entering edit mode
11.1 years ago

I'm not being a jerk: ADMIXTURE , it is a real program :-).

I would suggest thinking about MAF filtering and how you want to thin your markers. In the case of admixture you really want quality over quantity. I would try running admixture before and after filtering. It is surprising how much the signals change.

ADD COMMENT

Login before adding your answer.

Traffic: 1993 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6