Question

Cancer Methylation Wgbs Hg19 Datasets

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11.0 years ago

qliu2011 ▴ 40

Does anyone know about good WGBS datasets for hg19 cancer methylation of CpG sites by location? I've looked around on the Internet and didn't seem to come across any that are particularly comprehensive. A database where I can easily export CSV and tab-delimited files would be the best. Thanks.

methylation cancer dataset • 3.1k views

ADD COMMENT • link updated 11.0 years ago by PoGibas 5.1k • written 11.0 years ago by qliu2011 ▴ 40

score 2 · Answer 1 · 2013-12-08

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11.0 years ago

PoGibas 5.1k

Try HAIB Methyl RRBS track from the UCSC genome browser ("HAIB Methyl RRBS - DNA Methylation by Reduced Representation Bisulfite Seq").

Under table select cell type you prefer (e.g., ovarian cancer, melanoma)...

ADD COMMENT • link 11.0 years ago by PoGibas 5.1k

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Could be I'm looking in the wrong place but I don't see an option for HAIB methyl rrbs under "track".

ADD REPLY • link 11.0 years ago by qliu2011 ▴ 40

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Group - Regulation
Track - HAIB Methyl RRBS

Link

ADD REPLY • link 11.0 years ago by PoGibas 5.1k