Clustalw-Mpi

Question

[ebirckelbaw]

Hello, I have a small ubuntu beowulf cluster that I am trying to run clustalW-mpi on so i downloaded the package, compiled and "make" 'd it (which all seemed to work fine) and I downloaded a fasta file of tyrosine sequence off the website and am trying to run the program but when I tell it to run it starts up and then says No alignment! and stops. I am new to this so someone please let me know what to do, thanks!

[Andreas]

How exactly did you call it and what is the exact error message? Are you sure there was nothing else but 'No alignment'?

[Hamish]

See Parallelize Alignments Using Clustalw-Mpi for more recent alternatives to ClustalW-MPI.