Question

Is There Perl Script To Calculate 4Dtv?

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13.5 years ago

Jianguo Lu ▴ 200

How to calculate the 4DTV value between gene pairs? Thanks a lot.

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ADD COMMENT • link updated 13.5 years ago by Hranjeev ★ 1.5k • written 13.5 years ago by Jianguo Lu ▴ 200

score 2 · Answer 1 · 2011-06-08

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13.5 years ago

Hranjeev ★ 1.5k

What you're looking for exist in the BioPerl package in the form of a wrapper for CODEML or PAML. You have to change the value for noisy to 9 while doing the pairwise comparison so that you can get the value from the command line screen rather than the file.

Please refer here for the code use in BioPerl.

ADD COMMENT • link 13.5 years ago by Hranjeev ★ 1.5k

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Thank you for providing detail information. Appreciate it!

ADD REPLY • link 13.5 years ago by Jianguo Lu ▴ 200

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Hi, the link you provided refers to this very same page.

ADD REPLY • link 10.3 years ago by Prakki Rama ★ 2.7k