How To Download All Go Annotations From A Species In Gene Ontology Website?

Question

[sanchezcavani]

Does anyone know how to download all GO annotations from a species (e.g. Homo sapiens) in Gene Ontology website? Thanks.

Answer 1

[Martin Dinov]

If you scroll down to Homo sapiens on http://www.geneontology.org/GO.downloads.annotations.shtml and click on "annotations" that should be it: http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/gene_association.goa_human.gz?rev=HEAD

[sanchezcavani]

Thanks so much! So this is the complete dataset rather than slim GO?

[Martin Dinov]

Yes, it should be the complete list. The GO slims they offer are elsewhere at: http://www.geneontology.org/GO.slims.shtml

[sanchezcavani]

Got it. Thanks!