Question

Genomegraph (Bioconductor)

1

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13.5 years ago

User 7998 ▴ 150

Hi,

I would like to know if the Bioconductor GenomeGraph package is any use for viewing different alternative splicing events and if so, where might I find a tutorial on using Genomegraph for this purpose?

Regards,

Kevin

rna visualization r genome • 3.8k views

ADD COMMENT • link updated 12.7 years ago by Malachi Griffith 20k • written 13.5 years ago by User 7998 ▴ 150

score 3 · Answer 1 · 2011-06-09

First of all the package is called GenomeGraphs, and as with all BioConductor has great information in the vignettes.

Even a cursory glance at the PDF you will see that it's possible to show genes and alternative transcripts, it's in the Contents!

You might also be interested in this post from our very own Neil Saunders. You could even look at the paper too

Ram · Answer 2 · 2012-03-01

0

Entering edit mode

12.7 years ago

Malachi Griffith 20k

Working examples of GenomeGraphs can be found in this thread.

Other options for viewing alternative splicing events can be found in this thread.

ADD COMMENT • link updated 5.2 years ago by Ram 44k • written 12.7 years ago by Malachi Griffith 20k