Entering edit mode
10.8 years ago
HG
★
1.2k
Hi Everyone i am trying to run prodigal in batch mode for 50genome. I want after each run the two out put file name according to input file name. I am doing like this but its not renaming. Please help me out.
# Predicted gene
for file in ./*.fasta
do
echo $file
./prodigal.v2_60.linux -a out_trans -d out_nuc -i $file
mv out_trans $file_trans
mv out_nuc $file_nuc
done
I've answered in another thread, should be
"$file"_trans
and"$file"_nuc
Thank you so much.