How To Create A Header For A File Generated Via Transdecoder
0
0
Entering edit mode
10.8 years ago
alok.helix ▴ 120

Can somebody please give me the corresponding Header for the following file generated after the use of Transdecoder??

FA_desaturase        PF00487.19   257 TC00001|m.1          -            384   1.4e-32  113.1  18.0   1   1   1.9e-36   1.4e-32  113.1  12.5     3   250    83   345    81   348 0.87 Fatty acid desaturase
DUF3474              PF11960.3    136 TC00001|m.1          -            384   5.8e-09   36.0   0.1   1   1   1.3e-12   9.9e-09   35.3   0.1    84   132    16    64     6    67 0.85 Domain of unknown function (DUF3474)
ACOX                 PF01756.14   187 TC00006|m.10         -            664   6.2e-56  188.7   0.0   1   1   1.9e-59   9.6e-56  188.1   0.0     1   186   476   657   476   658 0.98 Acyl-CoA oxidase

Which is a better tool transdecoder or interproscan??

transcriptome annotation rnaseq • 1.8k views
ADD COMMENT
0
Entering edit mode

I'm guessing this is the output for HMMER, check their documentation.

ADD REPLY

Login before adding your answer.

Traffic: 2888 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6