Hallo people.....How can one extract target sequences with coil-coil domain from Marcoil domain output file....For instance if i have a domain file as shown below and i want to extract sequences with only coil-coil domain...
PREDICTED COILED-COIL DOMAINS: OVERVIEW
lcl|Os11t0689000-01 Similar to Leucine Rich Repeat family protein ## 1 ADIADCSLTT ARSLCFTTLL DGFEYHSSQS TVVKVPEREW GFPDNRNSPF IWASDSFERL RSGSLCGDTL RLDGEGANIR KLLSTLRNKV GRAQLVQVED KRKRVEEATK PCEFHEVKTI CILGLPGAGK TTLAKLLYSH HSTTEQQFQH RAFVSLSPGA NLTDTLTDIL LQVGAYNDDA TPYCGTGTPH QQYLIDNISA YLIG* . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 1.0 : 1 1. from 92 to 108 (length = 17) with max = 1.8 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 10.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 50.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 90.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 99.0 : 0
lcl|Os11t0493700-00 Similar to NBS-LRR type resistance protein (Fragment) ## 2 ARQHWHSLYI TTQGYKGFFD MHAWVCVSEQ FDPTYITKSI ISSLEKDNCG LSEVCSPHET LAKRIKHKMV LLVLDDVWNE RRDCWDLLCE PMNTAKLCMI IVTTRSERVA KLVQTMPNFY SLNCLSSEES WSLFKQVAFT VDNGNTPNLQ EIGMSIVKKC KGLPLAIKTL ASMLCYETCE QRWKDVIESE LWDLEQPRNE VLPSLELSYK NMPIYLKRCF VAISLYPKDY IFDRNQVLQL WKVLDLLQSD RHNNETEIGN RYLDELVERS FLLFLLTKVD GHYYKKYLMH DLIHDLACFL SADEFFRLDD SSTSIEIPQN ARYISIQNLA SSEISITPLA LRAIIVLPRA EVNINNSEAL FSKCEKLRAL VLGEGCLDQN LPALMGRLKL LRHLKLVTSF FSHSDPCWDH VDGLRGIGHL NNMLTLPPIH LRNDRIIELR SLNKLRELRI GGLGLHLTID GAKDARLQSK RHLQLLSLDF GDCCPDHNQQ VQLLESLRPH RNLGELIIMN YEGLKYPYWL GDASFSNLSQ IELGYSHIQY LPTLGDLPSL VSLHIHDMMI VERIGWEFCS HFHGVKGFPS LTQLRFNWMH KWSEWSGIVD GGFPRLRTLS ICHAHSLRLD NIESFPFRSL ITLELDKCCC ITTIPASTSL RTLRIDRRSF DLRRSSTDGP RLNRLPSLEC LTVICHDTTS ILLQPQHLPS LKKLNLSCEK LQYCDGLSGL TSLSVLKPWG CPKLPIHSLI PQLQLQTLDV RCSPGIYICT TTKDNSGGEL AAYICIFYK* . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 1.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 10.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 50.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 90.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 99.0 : 0
lcl|Os11t0130900-00 Similar to NB-ARC domain containing protein, expressed ## 3 ASEHGVGDGA IGSLLPKLVE VLKEEYDLHK GVRKKIKHLS QELESMNAVL LKVGEVPPDQ LDELVKLWAG DVRELSYDME DVVDAFLVHI DGPEPLDTHM LRRFRKKMAN FFNKCKHHHK IAGAIQDVNK KVEEVAARRD RYMVDNIIAK VTGPVTIDPR LQALYKKTTE LVGIEKQSEK LVKILSLGDD VHASDEKMKI VSIVGFGGLG KTTLSKAVYD KHKLAFDCGA FVPVGRDPDM KKVLRDILID FDYMNPNVMI LDERQLINEL RKLIQNKRFL FVIDDIWDKK SWELIRCALQ HSNCGGRVVV TTRIFEVATH IGDIYKMQPL SRDDSEILLY SRINDGEDRF LDSLSTEACD KILKKCGGVP LAIITIASLL ASKSGEDWSN VYNSIGFGER GNDIVENTRR ILSFSYYDLP SHLKACMLYL SLFREEYGIE KNLLIWKWIA EGFIQNEHAT GIGLFELGEG YFNELINRSM IQPMELEDNG YVYGCRVHDM VLDLVCSLSS EEKFATILDS DDQQKQLMVG SNARRLAVHG RSVEEHNHPQ LVNVGLEKVR SFSATQCGDI NVVTSYFRVL RVLTLEDCSV TGEACGKHRL EHVGNLRHLR YLGIWNTRID EFPKEVGDLK FLQTLNLSGT GIQQLPEAVG LLKQLLCLRI NDSIAVPAGL IGNLTSLQEL KIWPVDDVST RQFVKELGKL RELRILRCTI HISDEGMERD LLESLANLHK IRTLCILGSA LPSGITREAC FVTPQRLGQL CLECFKFSGL PVWINSSLLL NLTHLDVSVH VVQEQDMETL GRLPELCYLK LCSDYTRLVS IRNGDLQRYL FRKLRFFVSP FLFARFDDLH GRENDGGICI AVAPSIMMPS LESLVFCVYV RFLKDMVEMQ PGFDNLHMQL GFEKVASSSL QRVTATIQCE DATAAAEVEE AKTALAHAAD LHPNRPTLTT QMVNKHKMLS SDRELRV* . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 1.0 : 3 1. from 12 to 65 (length = 54) with max = 18.9 2. from 124 to 141 (length = 18) with max = 1.6 3. from 920 to 935 (length = 16) with max = 1.3 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 10.0 : 1 1. from 18 to 50 (length = 33) with max = 18.9 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 50.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 90.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 99.0 : 0
lcl|Os12t0270300-02 Hypothetical conserved gene ## 4 AYDIEDCIDL FIHKLSCGDA NANFVQKIGS KIKKLWGKHQ ITECIQELKN RVMEEDQRRK RNQIDDFISE PSVVEIDPRL PALYEEVERL VGIDGPREKI IKWIMTKGKP LEQRKVVSIV GLGGLGKTTL ANEVYKTIQG DFKCITFVSI SRTPNIRKIL VDMLKGLGSN GDVSEDEQNL ISHLRGFLKD KRYLIVFDDI WDIGAWKVVN CAFPENNLGS IIITTTRNTA VAEACSRTTS EGYLHSMQPL EEQDSQRLFY RRAFNSESCC PPHLEDISHA IISKCRSLPL AIISIASLLS IKPDTEDQWM QVHNSIGVTL NSDVEVRKIL MLSYYDLPYP LKNCLLYLSM YPEDYVIDRQ ELIWRWIAEG FIIEAKGKTR EQVGENYFNE LINRSLIQPV YIQYDGRASC CRVHDIVLDL IISLSTGQNF VTIVHEQQHW SSFKKIRRTW FPSNGTDNRI VKEITNNCSH VRSLFFDSPK PEQIPQFKKC HALRVLVLDG CMSLESQHIN SLTYLFQLKY LKLNVANVTE MPKDIGRLQQ LETLIIRGGG HVNEINIPSS VCRLQKLERL IVDYPMRLPD EIGFLQALEM LSLFYNIEYS IKCLQELRRL TRLRYLRIRT PFGGDVARFE RYKDAFYMTL DELGKNSLQS LHVHVTTKFS DTLMDSCCSS APGLRELSTS GVGISKLSEQ MISLSNLAYL VIFYNTRSND QKDINLLGCI PKLLYLKVIF AQGWEDGLTV GCGGFPCLKE LMFRHSRLHW LLFEPGAMPK LQRLSIELFA QKAASKLGFE QSFVHLSSLQ HLIVVLDCSD AHYKGRESFG RCH* . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 1.0 : 1 1. from 40 to 63 (length = 24) with max = 3.0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 10.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 50.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 90.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 99.0 : 0
lcl|Os10t0568600-00 Disease resistance protein domain containing protein ## 5 CIRLVNCRYL IMVDDIWTIR AWEAIQSVLC DNNRGSRIIV TTRIEAVAKA CSPAIGGHHI HHTQPLEFED SKKLFLSRTF VNKECPEELE DVMENILKRC GGLPLAIVSI ASVLAGYTSP GSKDKWESIY KSIGSHMESN PTLEGMRQIL ALNYNHLPHE LKGCMMYFSI FPEDYEVNKN RLLWRWIAEG LVTEKRGLSL MEVAESYLDD LVNRNMIQLR EDIEYYWKAQ MYRVHDMFLE VMVSKSLESN FASLLGGQYA TMSYDRIRRL SIQGDDDRLE NAEQPRKNTA ASAGVDDGIL DLEHVRSLSM FQHTGKKLLD QLGKFRLLRV LDLEGFKGAL TKDHMGYICR LYLLSFLSLK GIEVEEVPSE IGKLEHLQTL DVRQTSVRGL PDTVTKLYKL ERLQISYNGD ANLMWKLPLE LKKMKMLREV GFSVLGNHLQ VAQDVGELDH LQEMVVYVDD ITFDDNVLTE FANSLSKLYS LRRLIIGDVG YGKTLNFLDQ LPSPPQLLRH LMIAGGIDRL PSWIMSLTYL VQFNMSWGKV AGDQLFDVLC ELPSLETICI HNYCYEGNVL VARTRHRFPE LITLRIASGS KLPNVIRFEN GTMPKLENLL VNFTDNDEKK IIGIRHLTSL KEVQLWGNES NLALHRALKH LKSENKRRLF ESSSQFQIVV KYE* . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 1.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 10.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 50.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 90.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 99.0 : 0
lcl|Os01t0937300-03 Hypothetical conserved gene ## 6 DKVRQVGKDG AVARRWLSKV KSVAYDVEDV LDEFDAAQLI RNHQSKLKLY FSWNNPLLQK MTIARNMKNL RDKIVAIEKD GKMLNLVRHE PHAKGSRSNE TFTVSDDMEI GMLGRDAETE KIISLLLKTE AKEDISIIPI VGLGGLGKTT LAQAVFADKR VRVFDMKIWV YVSEDFDLLK IGKAIIRGAN RSISLDNCNL QFVQDNLIKE LANRRYLIGL DDLWEEYGEN LEKLKQMLQH GGKGSKIIVT TRNGSVVQVL HTGCLANQRK ICPVHEADHI NLDVLSPDDC WKVMKQRIFG PDDDQSGLEE IGRQIAGRCG GLPLVANALG QVMSEQRTVE AWRDIRDRKI VLDFIVDNRR DTLERVLLSY YYMKPNYKMC FTCLASFSKG FVVDSDRLIL QWSALGYIQA RHTGQSCIDY LLGMSFLQIS KSSSVSPVHA KAPRKLTMHD LVYDLAKIIA ADEVLVMDAN KPTTWDKANE HYCRHAQLVN YHKRTEIFKH IPCKIRTLCF RECPEMQLPR KAFSQTSYIR ILDLSGLSNE EQSTPSNPVL PSSIRRLMLL GYLDVSGFPI ISLPKSFHTL QNMQSLILSN CSLEILPANI GSLQKLCYLD LSRNSNLNKL PSSV* . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 1.0 : 2 1. from 64 to 80 (length = 17) with max = 1.5 2. from 225 to 238 (length = 14) with max = 1.4 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 10.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 50.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 90.0 : 0 NUMBER PREDICTED COILED-COIL DOMAINS WITH THRESHOLD 99.0 : 0
