Readdepth Directory

Question

[freddy]

I finally installed readDepth, but now I am confused on the directories I been following the direction on this website https://code.google.com/p/readdepth/wiki/Documentation its says to create three sub directories "reads/" "output/" "annotations/". Do I type these into the R terminal and where are the directories made, do the make folder that files will be place later.

Answer 1

[Chris Miller]

You can create these directories from the command line like so:

$mkdir reads annotation output

Or from R, if you prefer:

> dir.create("reads")
> dir.create("annotation")
> dir.create("output")

These directories should be present in the same directory that you plan to launch your commands from.