From Phased File Formats To Vcf

Question

[aleka]

I need to convert phased data (map and haplotype file) from the Hapmap Phase II data to vcf files. Are you familiar with any software that makes the conversion?

Answer 1

[Zhaorong]

You may want to take a look at the GATK VariantsToVCF tool: http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_variantutils_VariantsToVCF.html