Hello everybody,
I would to use geneBody_coverage.py from RSeQC software to get the read distribution along transcripts in my RNA-seq libraries. Basically, I would like to see if I have a 5' or 3' shortening of transcripts.
When I tried to run it, I get this error :
ImportError: dlopen(/Library/Python/2.7/site-packages/RSeQC-2.3.7-py2.7-macosx-10.8-intel.egg/csamtools.so, 2): Symbol not found: ___ks_insertsort_heap
Referenced from: /Library/Python/2.7/site-packages/RSeQC-2.3.7-py2.7-macosx-10.8-intel.egg/csamtools.so
Expected in: flat namespace
in /Library/Python/2.7/site-packages/RSeQC-2.3.7-py2.7-macosx-10.8-intel.egg/csamtools.so
I think I may have an installation issue but my informatic skills are too weak to know how to deal with this problem.
I will appreciate very much you help!!!
Thank you
Thanks for sharing, it solves my problem.
For freshman of python..... There is a small tips....
Before install a new version of 'pysam'
Remember deleting the older version in RSeQC folder.