Question

i have proteomics data in .raw format

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3.7 years ago

rishav513 ▴ 30

I have proteomics data in .raw format , how can I use it for proteomics analysis

protein • 4.3k views

ADD COMMENT • link updated 3.7 years ago by tothepoint ▴ 940 • written 3.7 years ago by rishav513 ▴ 30

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what is the output of file input.raw or head input.raw

ADD REPLY • link 3.7 years ago by Pierre Lindenbaum 164k

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The file is "hb.raw" and it is not accessible

ADD REPLY • link 3.7 years ago by rishav513 ▴ 30

score 1 · Answer 1 · 2021-03-22

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3.7 years ago

Malte Petersen ▴ 40

Depends on what you want to know. Have a look at this tutorial, which I found by just searching for "proteomics raw format". There is also a Bioconductor package for mass spec and proteomics analyses.

ADD COMMENT • link 3.7 years ago by Malte Petersen ▴ 40

score 1 · Answer 2 · 2021-03-22

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3.7 years ago

tothepoint ▴ 940

You need to convert your raw files in to .mgf format to proceed further. raw read directly seems tricky to understand.

ADD COMMENT • link 3.7 years ago by tothepoint ▴ 940