is the absolute value of `plink2.eigenvec.var` from `plink2 --pca biallelic-var-wts approx` a measure of how much each SNP drives PCS?
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3.7 years ago
curious ▴ 820

I am trying to figure out which SNPs have the largest influence on sample separation This link seems to suggest that I can take the absolute value of *.eigenvec.var. Would the numeric value for each PC be the SNP that contributes the most to sample separation in that PC?

Thanks

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