is it possible to extract all the exome information from WGS?

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3.7 years ago

Hyper_Odin ▴ 320

I was wondering if I can use the RNA seq pipeline but it will give only transcript counts. Not familiar with WGS, if it can be done kindly also let me know the tools and what will be the overall pipeline?

Thanks in Advance

genome sequencing • 1.1k views

ADD COMMENT • link updated 3.7 years ago by Michael 55k • written 3.7 years ago by Hyper_Odin ▴ 320

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WGS = Whole Genome Sequencing so this would not have any information about actual expression of genes so using an RNAseq pipeline would not be logical.

ADD REPLY • link 3.7 years ago by GenoMax 148k

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I don't understand the question. What do you want from WGS data ?

ADD REPLY • link 3.7 years ago by Pierre Lindenbaum 164k

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I want to extract all the exomes that are present. Is it possible?

ADD REPLY • link 3.7 years ago by Hyper_Odin ▴ 320

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exomes or exons? I think you have to make it clear for yourself what you want to do and then try to explain it better including some background information.

ADD REPLY • link 3.7 years ago by Michael 55k

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