Hi all,
First of all let me apologize if my question has already been posted here, but I couldn't find any answer with the search button .
I am quite new to Bioinformatics and found a while ago the great tool named megSAP, which creates a lot of useful files (Variant Calling, annotations, etc...) taking as input fastq files. After weeks of unsuccessful trials to install this tool correctly, I finally managed to make it work with the NA12878 sample but I stumbled with the import into the NGSD database, since the pipeline used to create the files makes use of a local MySQL database. I read in one of the numerous readme files of the project that there is a web interface which can be used with megSAP, but could not find it in the megSAP sources files on gitHub. Did someone use the web frontend to megSAP ?
I asked the author - you need to post your question on the GitHub issue tracker, as requested =)