Entering edit mode
3.6 years ago
salman_96
▴
70
Hi I have two files. One is a .ped file that looks like this
FamilyID indivID 0 0 2 1 2 1 2 1 2 2 2 ....
FamilyID indivID 0 0 2 1 2 1 2 2 1 2 1 ....
I prepared this file by adding --recode 12
to change dosage to 1 2 0 from A/G/T/A
I also have SNPs information in .bim and .map files.
I want to make a file that has both rsIDs and dosage information and should look like this.
ID rs12345 rs12345 .......................
1 2 2 .......................
2 1 1 .......................
3 2 2 .......................
4 1 1 .......................
5 2 2
6 1 1 ......................
And the list goes on,
Best regards, Salman