Converting Blast output to GFF

Question

[ahmad mousavi]

Hi

Is there anybody know, how to convert the Blast -outfmt 6 table to GFF file?

I have search for a tool but It I couldn't find anything.

Tnx

[Ram]

Do those two formats have equivalent information content? What are the query and subject databases used in the BLAST run?

[ahmad mousavi]

yes, almost they are equal to each other.

Answer 1

[h.mon]

I have searched (using your title as keywords) and I could find plenty of things:

https://mgkit.readthedocs.io/en/0.3.4/scripts/blast2gff.html

How To Convert Blast Results To Gff

https://metacpan.org/pod/distribution/GBrowse/contrib/blast2gff.pl

https://github.com/alvaralmstedt/Tutorials/wiki/How-to-convert-your-BLAST-results-into-a-gff-file.

http://dawgpaws.sourceforge.net/man/cnv_blast2gff.html

[ahmad mousavi]

Thanks, I have searched too, but rarely worked for my purpose, anyway thanks.

[Garrett]

This is a long shot, but did you ever figure it out?