Variant analysis for target NGS sequencing data?
0
0
Entering edit mode
3.7 years ago
MSRS ▴ 590

Hi everyone,

We have illumina fastq files having target sequences (specific gene). We want to go for variant/SNP calling.

Helping with suggesting any types of pipeline/s tools will be highly appreciated.

Thank you
NGS Variants • 970 views
ADD COMMENT •
0
Entering edit mode

What have you tried?

ADD REPLY •
0
Entering edit mode

I have tried Snippy. But It can process single sample at a time.

ADD REPLY •
1
Entering edit mode

What about samtools/bcftools/GATK?

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 1793 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6