Tool for list protein mutation sites from WT/variants sequences
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3.6 years ago

Hello!

Anyone can help me please? Do you know a tool for map the mutations sites given a WT protein sequence and proteins variants?

For example:

wt.fasta (1 seq in fasta format):

>wt_protein_example
MAAAAAAAAAA ...

variants.fasta (in multifasta file format)

>Variant_1
MAAAAAAAAAA ...

>Variant_2
MATAAAAAAAA ...

>Variant_3
MAAAPAAAARG ...

And for each protein sequence in variants.fasta file get a table (.CSV, etc) of mutations like:

enter image description here

Properly, I have 1 WT seq of TEM-1 b-lactamase and ~300,000 protein variants generated mi error prone PCR

Mutations Protein • 581 views
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