Fis, Ho and He calculation from Whole Genome Seq data

Question

[jaafari.omid]

Dears all,

I have a vcf file generated from WGS data which is included by 4 different groups. So I am interested to obtain the mean values of Fis and Heterozygosity per each group/population. The vcftools gives those parameters for each site but what I want is the mean value for each group indeed.

Any command or help is appreciated in advance.

Regards, Omid

[rthapa]

Hi, were you able to figure it out?

[jaafari.omid]

Hi, Actually not yet.