Question

Best assembly program for mitochondrion?

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3.6 years ago

zhousun21 ▴ 40

Hi all,

Can anyone suggest a good program for mito assembly?

I've tried NovoPlasty bit it throws errors on installation. (others have reported the error but it persists.)

I'm also having trouble using GetOrganelle to run due to python problems.

Can anyone suggest an alternative?

TIA.

mitochondrion assembly mito organelle • 1.2k views

ADD COMMENT • link updated 3.6 years ago by ponganta ▴ 590 • written 3.6 years ago by zhousun21 ▴ 40

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Novoplasty should run just fine if you ìnstall it via conda. What kind of sequencing data do you have?

ADD REPLY • link 3.6 years ago by ponganta ▴ 590

score 0 · Answer 1 · 2021-05-09

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3.6 years ago

pramach1 ▴ 40

I have used Mitobim. It has worked well for me in the past.

ADD COMMENT • link 3.6 years ago by pramach1 ▴ 40