how to download automatically complete genomes with biopython on ncbi
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3.6 years ago
Debut ▴ 20

I'm trying to download automatically all the Klebsiella pneumoniae genomes with biopython. Apparently now there are Size(Mb): 5.68232 Plasmids: 6 Assemblies: 10650. Please I have tried with the function Entrez.esearch. using this link for example https://www.ncbi.nlm.nih.gov/genome/browse#!/prokaryotes/815/
ncbi biopython • 912 views
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Save yourself the trouble and use a tool meant for this application: To retrive all sequences and How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?

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Cross-linking: more elegant way to bulk download genomes from the NCBI

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