Hello everyone, I would like to get a list of all assemblies in the table in this link: https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/815/ s'il vous plait.
If you are simply looking to get a table/list then there is a Download button to the top right of the linked page. That will allow you to download a TSV format file of the table.
If you are looking to download those genomes then the answers you have already received in prior threads are valid. If you are having specific issues with the tools/methods mentioned then provide details/errors.
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Yes, Thank you for your answer. I would like to retrieve the sequences (10 650 sequences) and when I use the method "wget ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/assembly_summary.txt" I can extract only about 300 sequences. And I want to retrieve the 10 650 sequences that are in the table. Moreover when I download as you said, I have an excel file in output. I don't know how I can manipulate it with a script. That's why, I would like to get all the identifiers of this table