Entering edit mode
3.5 years ago
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20
script-
arrayQualityMetrics(expressionset = raw_data,
+ outdir = tempdir(),
+ force = TRUE, do.logtransform = TRUE,
+ intgroup = c("Factor.Value..COMPOUND.", "Factor.Value..GENOTYPE."))
Getting this type of warning-
The report will be written into directory 'C:\Users\AppData\Local\Temp\RtmpOwGw0M'.
Warning messages:
1: In svgStyleAttributes(style, svgdev) :
Removing non-SVG style attribute name(s): subscripts, group.number, group.value
2: In svgStyleAttributes(style, svgdev) :
Removing non-SVG style attribute name(s): subscripts, group.number, group.value
3: In svgStyleAttributes(style, svgdev) :
Removing non-SVG style attribute name(s): subscripts, group.number, group.value
4: In svgStyleAttributes(style, svgdev) :
Removing non-SVG style attribute name(s): subscripts, group.number, group.value
5: In svgStyleAttributes(style, svgdev) :
Removing non-SVG style attribute name(s): subscripts, group.number, group.value
6: In svgStyleAttributes(style, svgdev) :
Removing non-SVG style attribute name(s): subscripts, group.number, group.value
7: In svgStyleAttributes(style, svgdev) :
Removing non-SVG style attribute name(s): subscripts, group.number, group.value
8: In svgStyleAttributes(style, svgdev) :
Removing non-SVG style attribute name(s): subscripts, group.number, group.value
9: In svgStyleAttributes(style, svgdev) :
Removing non-SVG style attribute name(s): subscripts, group.number, group.value
What does it mean?
https://support.bioconductor.org/p/76626/
Still getting same warning-
what version of arrayQualityMetrics are you using?
arrayQualityMetrics version- 3.47.0
what is the meaning of these warnings? How can I fix it?
No idea - you might want to contact bioconductor support or something.