Difference in SNP number in the output of Poolfreqdiff and Popoolation2 using the same filters.
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3.5 years ago
AGE ▴ 30

The program Poolfreqdiff is an alternative method to the CMH implemented in the program Popoolation2 and commonly used in pool-seq studies. I noticed that the program Poolfreqdiff gives output for fewer SNPs (25K) than Popoolation2 (47K) using the same filters. Does anyone know why?

pool-seq • 569 views
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