Entering edit mode
3.5 years ago
fouerghi20
▴
80
I have multiplexed 8 different perturbations on one sample together and as I am demultiplexing and assigning cells to their condition of origin, I am realizing that there are some clusters that appear to be perturbation-specific. I was wondering if there are potential batch effects and if people would recommend doing batch correction prior to clustering the perturbations together.