ChIP-seq correlation with CNS

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3.5 years ago

buffealo ▴ 130

Hello,

I wonder if it is possible to display ChIP - seq data as CNV graph. Maybe there is a tool or a method/software to convert ChIP data into segmented data.

Thank you so much in advance.

cnv segmented chip • 1.1k views

ADD COMMENT • link 3.5 years ago by buffealo ▴ 130

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Are you looking to call copy number variants from ChIP-Seq data or trying to correlate ChIP-Seq to CNVs? Your title says one thing and your post the other.

ADD REPLY • link 3.5 years ago by Ram 44k

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Yes and I wrote it wrong in the title. Sorry for the inconvenience. I am trying to use my ChIP-seq data to determine the CNV in the intergenic regions.

ADD REPLY • link 3.5 years ago by buffealo ▴ 130

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Probably better not to do so, you will not get sufficient genomic coverage from ChIP-seq data.

ADD REPLY • link 3.5 years ago by Rashedul Islam ▴ 480

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Is it possible to correlate ChIP-seq data with CNV? I do not know how but I mean maybe normalizing ChIP to copy number somehow

ADD REPLY • link 3.5 years ago by buffealo ▴ 130

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