Alternate Sources Of Reference Indel Vcfs Outside Of Dbsnp And 1000 Genomes Website

Question

[youngcsong]

Hi,

I am in a midst of testing some software tools for detecting indel from single sample genome data, and was wondering whether there is any source of reference indel files outside of dbSNP and 1000 genomes website. Thank you in advance,

Young

Answer 1

[Noushin N]

You can possibly get population allele frequency estimate for your indels in coding region from the exome variants server, linked below:

http://evs.gs.washington.edu/EVS/

[youngcsong]

Hi, thanks for your input. I am actually interested in looking not only the exome, but the whole genome data.

[Noushin N]

Another possibility I can think of is looking into public data available from personal genome project. There may be some overlaps with thousand genomes individuals, and the data may not be as nicely formatted as other resources mentioned here. Good luck!