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3.6 years ago
FantasticAI
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60
I'm trying to perform cell type annotation on my scRNAseq data, I wonder whether is there any published rat lung single cell RNA seq dataset available for cell type annotation now?
Many thanks!
Not sure if this is the same here, but these suggestions may apply, basically using published mouse references, then converting genes to rat orthologs (or vice versa):
https://support.bioconductor.org/p/9136905/
I guess there are notably fewer rat samples available than mouse as mouse is the more common model organism.
sra-explorer.info is a good tool to query NCBI for datasets.
Thanks, I'll go ahead and have a look, really appreciate the help!