Create Annotation for Long Read Nanopore Rna-Seq Data

Question

[santos48]

I have nanopore sequencing human Rna-seq data. I want to create feature counts files for differential expression, but how to create an annotation folder corresponding to what (whole hg38 genome or specific region)?

[GenoMax]

Have you looked at the pipeline published by ONT: https://github.com/nanoporetech/pipeline-transcriptome-de