Entering edit mode
3.5 years ago
hafiz.talhamalik
▴
350
I am trying to run MGmapper using Resfinder and Bacteria Database (downloaded from 'http://www.cbs.dtu.dk/public/MGmapper/databases/'). the following same issue arises everytime on ResFinder database due to which the bam file comes empty. how to counter this ???
[samopen] SAM header is present: 2131 sequences. [sam_read1] reference 'ID:bwa PN:bwa VN:0.7.17-r1198-dirty CL:/usr/local/bin/bwa mem -t 10 -M -p /media/9ce95615-e5d7-4b70-a54a-89fbb011c595/Softwares/MGmapper_v2.04/ResFinder/ResFinder - 46 @SQ SN:aac(2_)-Id_1_U72743 LN:633 @SQ SN:aac(2_)-Ie_1_NC_011896 LN:549 @SQ SN:aac(!' is recognized as '*'. [main_samview] truncated file.
