Downloading data from 1000Genomes

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3.5 years ago

peter ▴ 20

I need to download vcf files for all chromosomes from 1000Genomes from the following link:

If you click on '1000 Genomes on GRCh38' there are some vcf files for some chromosomes but some files are tbi which I understand is the index file for vcf files. So how can I use tbi file to download vcf file for a given chromosome for example chromosome 1. Chromosome 1 has tbi file but not the corresponding vcf file. Insights will be appreciated.

1000Genomes vcf • 982 views

ADD COMMENT • link updated 3.5 years ago by zx8754 12k • written 3.5 years ago by peter ▴ 20

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Filtering on "Variants" gives you 46 files, 23 *.vcf.gz, and 23 *.vcf.gz.tbi.

ADD REPLY • link 3.5 years ago by zx8754 12k

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Thank you zx8754. I figured it out :)

ADD REPLY • link 3.5 years ago by peter ▴ 20

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Feel free to share your solution below as an answer.

ADD REPLY • link 3.5 years ago by zx8754 12k

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