Color protein multiple sequence alignement per secondary structures

Question

[ttubiana]

Dear all,

I have a multiple sequence alignement in one hand and their corresponding PDBs in the other hand.
Is their a tool to color the MSA background with the color of the secondary structures ?
I tried ESPRIPT which use the DSSP template, but for multimer it doesn't work and my PDBs can be only a fraction of the published structure.

Thank your for your support, Best, Thibualt.

Answer 1

[ttubiana]

I got bored with current tools, I've made my own small and basic script...

If you are interested to do that, you can use my script: https://github.com/tubiana/colorMSAwithSSE
Example:

Best, Thibault.