trmap alternative for gffcompare?
0
0
Entering edit mode
3.5 years ago
SKY ▴ 60

I have two simple questions

1.Can trmap used as an alternative for gffcompare when trying to identify novel transcripts?

  1. How to interpret the output file of the following code $trmap -S -o charles <ref_gff> <query_gff>

Here, reff_gff used = my annotation.gff3 file query_gtf used = stringtie_merged.gtf file

I am not able to find enough resources to understand the output file ''charles". PFA "charles" charles screenshot

Please help

Best, Akash

GffCompare Novel-Transcripts StringTie RNA-Seq • 719 views
ADD COMMENT

Login before adding your answer.

Traffic: 2593 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6