construction of a database of bacterial genomic and protein sequences
0
0
Entering edit mode
3.6 years ago
Debut ▴ 20

Hello, I am a beginner in bioinformatics. I am trying to build a database of bacterial genomes and protein sequences with SQL. I don't know if it's good or not, can you help me please? Should I add tables or should I delete some in your opinion? Thank you. Here is my code:

create table Genome ( 
ID interger NOT NULL AUTO_INCREMENT,
name varchar (300) NOT NULL,
sequence text,
numero_accesion text);

create table gene (
ID integer NOT NULL AUTO_INCREMENT,
name text,
sequence text
FOREIGN KEY (ID_genome) REFERENCES genome (ID));

create table proteine (
ID integer NOT NULL AUTO_INCREMENT,
name text,
sequence text
FOREIGN KEY (ID_gene) REFERENCES gene (ID));

create table Espece(
ID integer NOT NULL AUTO_INCREMENT PRIMARY KEY,
name_latin text,
FOREIGN KEY (ID_Genome) REFERENCES genome (ID));
sql database mysql • 1.0k views
ADD COMMENT
1
Entering edit mode
ADD REPLY
0
Entering edit mode

thank you for your help, but I still can't find the answer

ADD REPLY
0
Entering edit mode

before continuing: the question is really to create a database in mysql?

you're thus not mixing this up with creating a "database" to be used in blast or such, right?

ADD REPLY
0
Entering edit mode

basically I have to make a graphical interface of a database. i.e. there will be a drop down list with the bacterial species. From that I can select the species. On this graphical interface also there will be a comparative analysis part (blast, alignment,..)

ADD REPLY
0
Entering edit mode

How much experience do you have building a GUI or a database? You seem to rely on external support for the most basic steps of your internship, how is that going to benefit your career?

ADD REPLY

Login before adding your answer.

Traffic: 1534 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6