How to create a subset from a Nanopore fast5 file?
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3.5 years ago
shelkmike ★ 1.4k

Imagine that I have a fast5 file created by MinION which contains information for 4000 reads. I have a list of titles for, say, 1000 reads, and I want to create a new fast5 file which contains information only for those 1000 reads. How to do this?
I will be grateful for possible help.

nanopore fast5 ont • 2.5k views
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Looks like fast5_fetcher (LINK) will do what you need.

ONT also has an official API.

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3.5 years ago

You can use a script from the ont-fast5-api

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Thank you, exactly what I needed

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