How can I solve unknown OTU ids: {1}". Error in PICRUST _Galaxy(Huttenhower lab)
0
1
Entering edit mode
4.0 years ago

I am trying to run PICRUST which is available in galaxy (Huttenhower lab) and getting error in normalize step.

How can I resolves this error?

> Traceback (most recent call last):   File
> "/galaxy-central/tools/picrust/scripts/normalize_by_copy_number.py",
> line 146, in <module>
>     main()   File "/galaxy-central/tools/picrust/scripts/normalize_by_copy_number.py",
> line 98, in main
>     count_table = convert_precalc_to_biom(count_table_fh,ids_to_load)   File "/galaxy_venv/local/lib/python2.7/site-packages/picrust/util.py",
> line 87, in convert_precalc_to_biom
>     raise ValueError,"One or more OTU ids were not found in the precalculated file!\nAre you using the correct --gg_version?\nExample
> of (the {0}) unknown OTU ids: {1}".format(len(ids_to_load),',
> '.join(list(ids_to_load)[:5])) ValueError: One or more OTU ids were
> not found in the precalculated file! Are you using the correct
> --gg_version? Example of (the 631) unknown OTU ids: 1868, 2100, 1948, 1943, 1941
PICRUST python • 975 views
ADD COMMENT
0
Entering edit mode

Did you investigate the last line?

Are you using the correct  --gg_version? Example of (the 631) unknown OTU ids: 1868, 2100, 1948, 1943, 1941
ADD REPLY

Login before adding your answer.

Traffic: 2358 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6