mirge3.0 custom miRNA db option

Question

[RNAseqer]

Is there a way to provide mirge 3.0 with a list of coordinates or fasta files for a custom db of mature miRNAs? I would like to have mirge calculate the counts for a set of miRNAS I specifically define based on some previous findings.

Answer 1

[arun]

Hi there,

Yes. There is a way, you can edit the inbuilt libraries, and add your custom sequences to it. I know it is a 20 months old question, but if you or anybody require such a need in future, please create an issue at https://github.com/mhalushka/miRge3.0. I will be able to expand on the details.

Thanks, Arun.