Molecular docking

Question

[diabateoudou]

I'm want to know how to convert a sdf unique file contenting several molecules coordinate to pdbqt format ?

[tothepoint]

Use openbabel to first split sdf file into individual files. Following the splitting step convert each file into .pdb or .mol format.

obabel *.sdf -opdb -m

Finally use vina python module prepare_ligand4.py to convert it into .pdbqt.