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3.5 years ago
Michel Edwar
▴
80
I am trying to align mouse genome mm10 using HISAT2 command
hisat2 -x /mnt/c/mkr-index2/mm10_adera/genome -1 SRR11209326_1.fastq.gz -2 SRR11209326_2.fastq.gz
I get the error message
HISAT2 error message :Could not locate a HISAT2 index corresponding to basename "/mnt/c/mkr-index2/mm10_adera/genome
the genome folder contains the following files
genome.1.ht2
genome.2.ht2
genome.3.ht2
genome.4.ht2
genome.5.ht2
genome.6.ht2
genome.7.ht2
genome.8.ht2
What is the output of
ls /mnt/c/mkr-index2/mm10_adera/
?genome make_mm10.sh mm10_genome.tar