Hello everyone: I submitted a job via slurm and got this error: Error: cannot allocate vector of size 7.8 Gb Execution halted Warning message: system call failed: Cannot allocate memory I have run this job but my job got terminated and the error was this. Can anyone tell me how to solve this? I am running R job via sbatch.
You need to provide more details:
What is your slurm job specifications? How big are your data?
This error looks like R complaining not having enough memory to allocate the required data. Increasing your slurm batch job memory requirement to like 20G might help. But there's no way for us to know unless you provide more information.
the file size is 37,587,249 KB